Job details
| Job ID | example_output |
|---|---|
| Start time | 2026-06-29 18:44:43 |
| Execution time | 08:21:54 |
| Sequence type | nucleotide |
| Calling method | amrfinderplus |
| Organism | Staphylococcus_aureus |
| Accepted files | 71 |
| Completed genome files | 71 |
| Failed genome files | 0 |
| Rejected files | 0 |
| Total AMRFinderPlus hits | 482 |
Bulk summary
Viewer
Results per genome
Organism-specific runs can add point-mutation screening and remove some common, non-informative genes for supported taxa. Use the full TSV download when you need all AMRFinderPlus columns.
AMRFinderPlus detects genetic determinants. A detected gene or mutation does not by itself guarantee measured phenotypic resistance.
The scope field separates core AMR findings from plus findings such as stress-response, biocide, metal, virulence, or other curated elements.
The gene, allele, gene family, or point-mutation label assigned to the detected element.
A broad category for the element, commonly AMR, STRESS, VIRULENCE, or POINT where supported by the database.
Functional grouping of the detected determinant, such as antimicrobial class and a more specific subclass when available.
A sequence-level match to a curated reference allele.
A named allele-level result where the sequence is assigned to a curated allele.
A similarity-based hit to a curated reference. Check identity and coverage before treating lower-similarity hits as definitive.
Only part of the reference element was detected; these calls need cautious interpretation.
A profile-model based detection, often useful for more diverse families where exact sequence matching is insufficient.
A curated point mutation associated with resistance or another phenotype in supported organisms.
The hit contains an internal stop codon, which may indicate disruption or a sequence-quality issue.
Suffixes can flag exact, partial, or nucleotide-level distinctions in AMRFinderPlus naming. Use the full TSV and NCBI documentation for reporting.
Glossary adapted from the public NCBI AMRFinderPlus interpreting-results reference.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
No AMRFinderPlus hits were reported for this genome file.
Downloads
Combined results (TSV) |
|
All result files (ZIP) |
|
Job manifest (JSON) |
|
Job logfile |
