About AMRCaller

AMRCaller provides antimicrobial resistance (AMR) genotypic predictions.

Currently, we are only supporting AMRFinderPlus, as the main prediction method.

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence. Feldgarden M, Brover V, Gonzalez-Escalona N, Frye JG, Haendiges J, Haft DH, Hoffmann M, Pettengill JB, Prasad AB, Tillman GE, Tyson GH, Klimke W. Sci Rep. 2021 Jun 16;11(1):12728

AMRFinderPlus: Unavailable Database: Unavailable Last update: Not recorded Status: unknown

See an example output here

Submit your job

STEP 1: Upload one or more FASTA files, or a ZIP archive containing FASTA genome files

N.B. Bulk submissions are supported. Malicious paths, executable files, nested ZIPs, binary files, and invalid FASTA content will be rejected before analysis.

Drag and drop FASTA files or a ZIP archive here, or click to select

STEP 2: Select your job parameters

N.B. If no organism is chosen, the job will be submitted without organism-specific optimisations.

Organism:

Calling method:

Contact us

For queries and to report any issues, email us at: email[at]biology.ox.ac.uk

Ineos Oxford Institute for antimicrobial research

University of Oxford

Sir William Dunn School of Pathology

South Parks Road

Oxford, OX1 3RE

United Kingdom