SpeciesID is a tool for species identification from genomes employing Ribosomal Multilocus Sequence Typing (rMLST).
Further details of the methodology can be found in the following publication:
The rps gene variation catalogued in this database permits rapid identification of the phylogenetic position of any bacterial sequence at the domain, phylum, class, order, family, genus, species and strain levels. Jolley et al. 2012 Microbiology 158:1005-15
If you use SpeciesID, please cite the above publication.
Upload a FASTA file with a genome assembly. See an example output here
N.B. Single file uploads are only supported. For large-scale submissions, please contact us.
For any queries about this tool contact broncio.aguilarsanjuan[at]biology.ox.ac.uk
