About GenomeForge-Pro

GenomeForge-Pro is a public web platform for the assembly of genomes from sequence reads for prokaryotes or bacteria.

Currently, we only support Illumina short reads. We implement several well-known methods and tools such as Shovill and Unicyler.

Submit your job

STEP 1: Provide an input

GenomeForge-Pro takes forward and reverse reads in FASTQ format. You can either provide run accessions or upload your own reads via the drag and drop or upload buttons.

OPTION A: Provide a list of run accessions [SRR#, ERR#, DRR#, CRR#]

OPTION B: Upload a textfile file with a list of run accessions

OPTION C: Upload paired-end reads [#1.fastq(.gz) and #2.fastq(.gz)]

Drag and drop files here or click to select

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STEP 2: Select an assembly method

Once an accession is provided or read files are selected, you can select the assembler of your choice.

Shovill (SPAdes)

Shovill (Megahit)

Shovill (Velvet)

Shovill (Skesa)

Unicycler (SPAdes)

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STEP 3: Clear or hit Submit

Submit Clear

Contact us

For queries and to report any issues, email us at: email[at]biology.ox.ac.uk