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Job ID: 20260623_4ePJxijI5VG0bu3pZw3TMjKZAn3oix

Submission time: 2026-06-23 13:52:16

Execution time: 13:10:50

Input file: staphylococcus-aureus_icaB_aligned_sequences.fa

Alignment type: nucleotide and protein

Reference isolate: icaB

Reading frame: 1

Input Isolate-Categories: False

Viewer

Viewer plots show mutation frequency across the aligned sequence. Peaks above the dashed threshold mark positions where a mutation class is common in the submitted population.
Nucleotide analyses separate synonymous mutations, non-synonymous mutations, insertions, deletions, and stop codons using the selected reading frame.
Protein analyses summarise amino-acid variation after translation or from a protein alignment.
Grouped analyses are produced when an Isolate-Category CSV is supplied. Compare category-specific plots to spot mutations enriched in one group.
Missing isolates may have been filtered because GeneScanner removes low-coverage or low-identity sequences before profiling. The log records removed sequence IDs.

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Downloads

Output file (XLSX) contains the numeric mutation profile behind the plots, including per-position counts and any category-specific worksheets.
Log file records input checks, filtered isolates, MAFFT/viewer messages, and any warnings that explain unexpected plots.
All files (ZIP) bundles the spreadsheet, plots, logs, and intermediate files needed to share or archive the complete job.

Ineos Oxford Institute for antimicrobial research

University of Oxford

Sir William Dunn School of Pathology

South Parks Road

Oxford, OX1 3RE

United Kingdom