GeneScanner analyses mutation rates with respect to a reference in a population of sequences.
You can analyse nucleotide and protein sequence alignments.
You can also perform both analyses, given an initial nucleotide alignment that then gets translated and realigned post-translation using MAFFT.
The underlying software is freely available on GitHub, here.
Please, use the drag-and-drop area to upload your sequence alignment files. Then, select an Analysis type and optionally a Reading frame (default is 1). Optionally, submit a CSV file with a list isolate and group pairs to analyse isolate categories separately.
For queries and to report any issues, email us at: email[at]biology.ox.ac.uk
